Bioinformatics Concentration


This Concentration is designed for students interested in computational discovery and management of biological data, primarily genomic, proteomic or metabolomic data. Bioinformatics concentration studies emphasize computational, statistical and other mathematical approaches for depicting (modeling) and analyzing high-throughput biological data, and the inherent structure of biological information. Example research problems include finding statistical patterns that reveal genomic or evolutionary or developmental information, or how regulatory sequences give rise to “programs” of gene expression, or how the genome encodes the capabilities of the human mind.

 

 

APPROVED LIST - CONCENTRATIONS FOR THE ACADEMIC YEAR 2008-2009

Recommended courses are shown with *. Tentative schedule in parentheses.

Consult Curricular & Courses at www.registrar.ucla.edu/catalog/ for detailed course descriptions.


I. The following 3 premajor Program in Computing (PIC) courses (14 units) (in addition to PC 10A or CS 31 required in the premajor):

PIC 10B Intermediate Programming (W,Sp )
PIC 10C Advanced Programming (Sp)
PIC 60 Data Structures and Algorithms (W)
  OR  
the following 2 premajor Computer Science (CS) courses (8 units) (in addition to PIC 10A or CS 31 required in the premajor):
CS32 Introduction to Computer Science II (F,W,Sp)
CS 180 Introduction to Algorithms and Complexity (F,W,Sp)

II. Six additional courses selected from the following 3 groups. At least one course from each Group A, B and C must be included, and the entire 6 must form a coherent set, as justified in the student's narrative submitted when applying to the Major. These courses must be chosen in consultation with a faculty mentor and approved by the Program Chair.

(A) BI Methodology

Math 113 Combinatorics  
Math 134 Linear and Nonlinear Systems of Differential Equations  
Math 142 Mathematical Modeling  
EE 103 or Math 151A Applied Numerical Methods  
Math 151B Applied Numerical Methods  
Math 170B Probability Theory  
EE 131B or Math 171 Stochastic Processes  
Math 191 Bioinfor-math-ics  
EE 142 Linear Systems  
Stats M254/Biomath M271 Statistical Methods in Computational Biology  
Statistics 165 Statistical Methods and Data Mining in Microarray Analysis  
Statistics C180 Introduction to Bayesian Statistics  
Biomath 106 Introduction to Cellular Modeling  
Biomath 108 Introduction to Modeling in Neurobiology  
Human Genetics C144 Genomic Technology  
Human Genetics M207A Theoretical Genetic Modeling (same as Biomath 207A, Biostats M272) (really rigorous, elegant complement to BI, for the strong at heart only)  
Human Genetics M207B Applied Genetic Modeling (same as Biomath 207B, Biostats M237) (more applied, less rigorous, but still substantive. Requires Biostats 110A/B)  

(B) BI Computer Science

Math 157 Software Techniques for Scientific Computing  
PC 110 Parallel and Distinguished Computing (5 units)  
CS 130 Software Engineering  
CS 143 Introduction to Data Base Systems  
CS 170A Mathematical Modeling & Methods for Computer Science  
CS 171L Data Communications Lab (2-4 units)  
CS 180 Introduction to Algorithms and Complexity  
CS 181 Introduction to Formal Languages & Automata Theory  
CS CM186C/CM286C Biomedical Systems/Biocybernetics Research Lab  
CS M296A Modeling Methodology in Biological Systems  

(C) BI Molecular & Cellular Biochemistry

MCDB 100 Introduction to Cell Biology  
MCDB 156 Human Genetics  
MIMG 101 Introductory Microbiology  
MIMG 101L Introductory Microbiology Lab  
MIMG 106 Molecular and Genetic Basis of Bacterial Infections  
MIMG 168 Molecular Parasitology (good biological systems analysis course)  
MIMG 185A Immunology  
Chemistry 110A Physical Chemistry: Chemical Thermodynamics  
Chemistry 110B Physical Chemistry: Intro to Statistical Mechanics & Kinetics  
Chemistry 125 Computers in Chemistry  
Chemistry 153A Biochemistry: Intro to Structure, Enzymes & Metabolism  
Chemistry 153B Biochemistry: DNA, RNA and Protein Synthesis  
Chemistry 153G Macromolecular Structure  
Chemistry 156 Physical Biochemistry  
Chemistry CM160A/CM260A* Introduction to Bioinformatics (NEW Pre-Requisite: PIC60 or CS 180) A must!
Chemistry C160B/C260B Algorithms in Bioinformatics and Systems Biology  
Biological Chemistry CM169 Cell Structure, Signaling and Differentiation (Same as Human Genetics and MCDB CM169)  
Biological Chemistry CM178 Molecular Genetics (Same as Human Genetics and MCDB CM178)